Plastome sequencing of Myripnois dioica and comparison within Asteraceae

doi:10.1016/j.pld.2019.07.003

Plant Diversity ›› 2019, Vol. 41 ›› Issue (05): 315-322.DOI: 10.1016/j.pld.2019.07.003

Plastome sequencing of Myripnois dioica and comparison within Asteraceae

Nan Lin^a,b,c, Xu Zhang^a,b, Tao Deng^c, Jianwen Zhang^c, Aiping Meng^a, Hengchang Wang^a, Hang Sun^c, Yanxia Sun^a

a CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, 430074, China;
b University of Chinese Academy of Sciences, Beijing, 100049, China;
c CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China

收稿日期:2019-03-22 修回日期:2019-07-05 出版日期:2019-10-25 发布日期:2019-11-21
通讯作者: Hang Sun,E-mail addresses:sunhang@mail.kib.ac.cn;Yanxia Sun,E-mail addresses:sunyanxia@wbgcas.cn.
基金资助:
This study was supported by the Strategic Priority Research Program of Chinese Academy of Sciences (XDA20050203), the National Key R&D Program of China (2017YFC0505200), the Major Program of the National Natural Science Foundation of China (31590823), and the National Natural Science Foundation of China (31570213).

Plastome sequencing of Myripnois dioica and comparison within Asteraceae

Nan Lin^a,b,c, Xu Zhang^a,b, Tao Deng^c, Jianwen Zhang^c, Aiping Meng^a, Hengchang Wang^a, Hang Sun^c, Yanxia Sun^a

a CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, 430074, China;
b University of Chinese Academy of Sciences, Beijing, 100049, China;
c CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China

Received:2019-03-22 Revised:2019-07-05 Online:2019-10-25 Published:2019-11-21
Contact: Hang Sun,E-mail addresses:sunhang@mail.kib.ac.cn;Yanxia Sun,E-mail addresses:sunyanxia@wbgcas.cn.
Supported by:
This study was supported by the Strategic Priority Research Program of Chinese Academy of Sciences (XDA20050203), the National Key R&D Program of China (2017YFC0505200), the Major Program of the National Natural Science Foundation of China (31590823), and the National Natural Science Foundation of China (31570213).

摘要/Abstract

摘要： Myripnois is a monotypic shrub genus in the daisy family constricted to northern China. Although wild populations of Myripnois dioica are relatively rare, this plant may potentially be cultured as a fine ornamental. In the present study, we sequenced the complete plastome of M. dioica, generating the first plastome sequences of the subfamily Pertyoideae. The plastome of M. dioica has a typical quadripartite circular structure. A large~20-kb and a small~3-kb inversion were detected in the large single copy (LSC) region and shared by other Asteraceae species. Plastome phylogenomic analyses based on 78 Asteraceae species and three outgroups revealed four groups, corresponding to four Asteraceae subfamilies:Asteroideae, Cichorioideae, Pertyoideae and Carduoideae. Among these four subfamilies, Pertyoideae is sister to Asteroideae + Cichorioideae; Carduoideae is the most basal clade. In addition, we characterized 13 simple sequence repeats (SSRs) that may be useful in future studies on population genetics.

关键词: Myripnois, Asteraceae, Plastomes, Large inversion, Phylogenomic analyses

Abstract: Myripnois is a monotypic shrub genus in the daisy family constricted to northern China. Although wild populations of Myripnois dioica are relatively rare, this plant may potentially be cultured as a fine ornamental. In the present study, we sequenced the complete plastome of M. dioica, generating the first plastome sequences of the subfamily Pertyoideae. The plastome of M. dioica has a typical quadripartite circular structure. A large~20-kb and a small~3-kb inversion were detected in the large single copy (LSC) region and shared by other Asteraceae species. Plastome phylogenomic analyses based on 78 Asteraceae species and three outgroups revealed four groups, corresponding to four Asteraceae subfamilies:Asteroideae, Cichorioideae, Pertyoideae and Carduoideae. Among these four subfamilies, Pertyoideae is sister to Asteroideae + Cichorioideae; Carduoideae is the most basal clade. In addition, we characterized 13 simple sequence repeats (SSRs) that may be useful in future studies on population genetics.

Key words: Myripnois, Asteraceae, Plastomes, Large inversion, Phylogenomic analyses

Nan Lin, Xu Zhang, Tao Deng, Jianwen Zhang, Aiping Meng, Hengchang Wang, Hang Sun, Yanxia Sun. Plastome sequencing of Myripnois dioica and comparison within Asteraceae[J]. Plant Diversity, 2019, 41(05): 315-322.

图/表 7

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变异来源 Source of variation	III型平方和 III type sum of square	自由度 Degree of freedom	均方 Mean square	组内组间误差 Within- and between-group error	差异显著性的检验值 Significance
月份 Month	0.826	23	0.036	4.093	< 0.001
月份×林分 Month×Stand	0.444	23	0.019	2.202	0.004
林分 Stand	1.244	1	1.244	31.573	0.005

变异来源 Source of variation	III型平方和 III type sum of square	自由度 Degree of freedom	均方 Mean square	组内组间误差 Within- and between-group error	差异显著性的检验值 Significance
月份 Month	0.826	23	0.036	4.093	< 0.001
月份×林分 Month×Stand	0.444	23	0.019	2.202	0.004
林分 Stand	1.244	1	1.244	31.573	0.005

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Plastome sequencing of Myripnois dioica and comparison within Asteraceae

Plastome sequencing of Myripnois dioica and comparison within Asteraceae

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