Plant Diversity ›› 2019, Vol. 41 ›› Issue (01): 13-18.DOI: 10.1016/j.pld.2018.12.002
• Articles • Previous Articles Next Articles
Jian-Ling Guoa, Wen-Juan Caoa, Zhi-Min Lia, Yong-Hong Zhanga, Sergei Volisb
Received:
2018-10-27
Revised:
2018-12-22
Online:
2019-02-25
Published:
2019-03-15
Contact:
Yong-Hong Zhang, Sergei Volis
Supported by:
Jian-Ling Guo, Wen-Juan Cao, Zhi-Min Li, Yong-Hong Zhang, Sergei Volis. Conservation implications of population genetic structure in a threatened orchid Cypripedium tibeticum[J]. Plant Diversity, 2019, 41(01): 13-18.
Add to citation manager EndNote|Ris|BibTeX
Aagaard, J.E., Harrod, R.J., Shea, K.L., 1999. Genetic variation among populations of the rare clustered lady-slipper orchid (Cypripedium fasciculatum) from Washington State, USA. Nat. Area J. 19, 234e238. Arditti, J., Ghani, A.K.A., 2000. Tansley Review No. 110. Numerical and physical properties of orchid seeds and their biological implications. New Phytol. 145, 367e421. Avise, J.C., Hamrick, J.L., 1996. Conservation Genetics:Case Histories from Nature.Chapman and Hall, New York. Barrett, S.C.H., Kohn, J.R., Falk, D.A., Holsinger, K.E., 1991. Genetic and evolutionary consequences of small population size in plants:implications for conservation.In:Falk, D.A., Holsinger, K.E. (Eds.), Genetics and Conservation of Rare Plants.Oxford University Press, New York, pp. 3e30. Bornbusch, A.H., Swender, L.A., Hoogerwerf, D.L., 1994. Genetic variation in Massachusetts populations of Cypripedium arietinum R. Brown in Ait. And C. Acaule Ait. (Orchidaceae). Rhodora 96, 354e369. Brzosko, E., Wróblewska, A., Tałałaj, I., Wasilewska, E., 2011. Genetic diversity of Cypripedium calceolus in Poland. Plant Systemat. Evol. 295, 83e96. Case, M.A., 1994. Extensive variation in the levels of genetic diversity and degree of relatedness among five species of Cypripedium (Orchidaceae). Am. J. Bot. 81, 175e184. Case, M.A., Mlodozeniec, H.T., Wallace, L.E., Weldy, T.W., 1998. Conservation genetics and taxonomic status of the rare Kentucky lady's slipper:Cypripedium kentuckiense (Orchidaceae). Am. J. Bot. 85, 1779e1786. Chen, X.Q., Cribb, P.J., 2009. Cypripedium Linnaeus. In:Wu, Z.Y., Raven, P.H. (Eds.), Flora of China, vol. 25. Science Press/Missouri Botanical Garden Press, Beijing/St.Louis, pp. 22e33. Chung, J.M., Park, K.W., Lee, S.H., Chung, M.G., Chung, M.Y., 2009. Contrasting levels of genetic diversity between the historically rare orchid Cypripedium japonicum and the historically common orchid Cypripedium macranthos in South Korea.Bot. J. Linn. Soc. 160, 119e129. Clement, M., Posada, D., Crandall, K.A., 2000. TCS:a computer program to estimate gene genealogies. Mol. Ecol. 9, 1657e1659. Crandall, K.A., Bininda-Emonds, O.R.P., Mace, G.M., Wayne, R.K., 2000. Considering evolutionary processes in conservation biology. Trends Ecol. Evol. 15, 290e295. Cribb, P., Green, P., 1997. The Genus Cypripedium. Kew Royal Botanic Gardens, Timber Press, Portland, Oregon, USA, pp. 23e24. Dupanloup, I., Schneider, S., Excoffier, L., 2002. A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 11, 2571e2581. Excoffier, L., Laval, G., Schneider, S., 2005. Arlequin (version 3.0):an integrated software package for population genetics data analysis. Evol. Bioinformat. Online 1, 47e50. Fawcett, T., 2006. An introduction to ROC analysis. Pattern Recogn. Lett. 27, 861e874. Forrest, A.D., Hollingsworth, M.L., Hollingsworth, P.M., Sydes, C., Bateman, R.M., 2004.Population genetic structure in European populations of Spiranthes romanzoffiana set in the context of other genetic studies on orchids. Heredity 92, 218. Frankham, R., 2012. How closely does genetic diversity in finite populations conform to predictions of neutral theory? Large deficits in regions of low recombination. Heredity 108, 167e178. Frankham, R., Bradshaw, C.J.A., Brook, B.W., 2014. Genetics in conservation management:revised recommendations for the 50/500 rules, Red List criteria and population viability analyses. Biol. Conserv. 170, 56e63. GBIF.org, 23 August 2018. GBIF Occurrence. https://doi.org/10.15468/dl.1jsz49. George, S., Sharma, J., Yadon, V.L., 2009. Genetic diversity of the endangered and narrow endemic Piperia yadonii (Orchidaceae) assessed with ISSR polymorphisms. Am. J. Bot. 96, 2022e2030. Hall, T.A., 1999. BioEdit:a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95e98. Hamrick, J.L., Godt, M.J.W., 1996. Effects of life history traits on genetic diversity in plant species. Phil. Trans. Biol. Sci. 351, 1291e1298. Hijmans, R.J., Cameron, S.E., Parra, J.L., Jones, P.G., Jarvis, A., 2005. Very high resolution interpolated climate surfaces for global land areas. Int. J. Climatol. 25, 1965e1978. Jacquemyn, H., Brys, R., Vandepitte, K., Honnay, O., Roldán-Ruiz, I., Wiegand, T., 2007. A spatially explicit analysis of seedling recruitment in the terrestrial orchid Orchis purpurea. New Phytol. 176, 448e459. Jersáková, J., Malinova, T., 2007. Spatial aspects of seed dispersal and seedling recruitment in orchids. New Phytol. 176, 237e241. Li, P., Luo, Y.B., Bernhardt, P., Yang, X.Q., Kou, Y., 2006. Deceptive pollination of the lady's slipper Cypripedium tibeticum (Orchidaceae). Plant Systemat. Evol. 262, 53e63. Librado, P., Rozas, J., 2009. DnaSP v5, A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451e1452. Loveless, M.D., Hamrick, J.L., 1984. Ecological determinants of genetic structure in plant populations. Annu. Rev. Ecol. Systemat. 15, 65e95. Ma, J.M., Yin, S.H., 2009. Genetic diversity of Dendrobium fimbriatum (Orchidaceae), an endangered species, detected by inter-simple sequence repeat (ISSR). Acta Bot. Yunnanica 31, 35e41. Machon, N., Bardin, P., Mazer, S.J., Moret, J., Godelle, B., Austerlitz, F., 2003. Relationship between genetic structure and seed and pollen dispersal in the endangered orchid Spiranthes spiralis. New Phytol. 157, 677e687. Moritz, C., Faith, D.P., 1998. Comparative phylogeography and the identification of genetically divergent areas for conservation. Mol. Ecol. 7, 419e429. https://doi.org/10.1046/j.1365-294x.1998.00317.x. Murren, C.J., Ellison, A.M., 1998. Seed dispersal characteristics of Brassavola nodosa(Orchidaceae). Am. J. Bot. 85, 675e680. Neale, J.R., 2012. Genetic considerations in rare plant reintroduction:practical applications (or How are we doing?). In:Maschinski, J., Haskins, K.E., Raven, P.H.(Eds.), Plant Reintroduction in a Changing Climate:Island Press/Center for Resource Economics, pp. 71e88. Nei, M., 1987. Molecular Evolutionary Genetics. Columbia University, New York. Nei, M., Tajima, F., 1983. Maximum likelihood estimation of the number of nucleotide substitutions for restriction sites data. Genetics 105, 207e216. Nybom, H., Bartish, I.V., 2000. Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspect.Plant Ecol. Evol. Systemat. 3, 93e114. Oxelman, B., Lidén, M., Berglund, D., 1997. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systemat. Evol. 206, 393e410. Petit, R.J., el Mousadik, A., Pons, O., 1998. Identifying populations for conservation on the basis of genetic markers. Conserv. Biol. 12, 844e855. Phillips, S.J., Anderson, R.P., Schapire, R.E., 2006. Maximum entropy modeling of species geographic distributions. Ecol. Model. 190, 231e259. Phillips, S.J., Dudik, M., 2008. Modeling of species distributions with Maxent:new extensions and a comprehensive evaluation. Ecography 31, 161e175. Pillon, Y., Qamaruz-Zaman, F., Fay, M.F., Hendoux, F., Piquot, Y., 2007. Genetic diversity and ecological differentiation in the endangered fen orchid (Liparis loeselii). Conserv. Genet. 8, 177. Pons, O., Petit, R.J., 1996. Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics 144, 1237e1245. Qian, X., Li, Q.-J., Liu, F., Gong, M.-J., Wang, C.-X., Tian, M., 2014. Conservation genetics of an endangered lady's slipper orchid:Cypripedium japonicum in China. Int. J. Mol. Sci. 15, 11578e11596. Reed, D.H., Frankham, R., 2003. Correlation between fitness and genetic diversity.Conserv. Biol. 17, 230e237. Ross, A.A., Travers, S.E., 2016. The genetic consequences of rarity in the western prairie fringed orchid (Platanthera praeclara). Conserv. Genet. 17, 69e76. Ryder, O.A., 1986. Species conservation and systematics:the dilemma of subspecies.Trends Ecol. Evol. 1, 9e10. Smith, J.L., Hunter, K.L., Hunter, R.B., 2002. Genetic variation in the terrestrial orchid Tipularia discolor. Southeast Nat. 1, 17e26. Summerhayes, V., 1951. Wild Orchids of Britain. Collins, London. Swarts, N.D., Dixon, K.W., 2009. Perspectives on orchid conservation in botanic gardens. Trends Plant Sci. 14, 590e598. Taberlet, P., Gielly, L., Pautou, G., Bouvet, J., 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17, 1105e1109. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The CLUSTAL X windows interface:flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876e4882. UNEP-WCMC, C., 2014. Checklist of CITES Species. CITES Secretariat, Geneva, Switzerland, and UNEP-WCMC, Cambridge, United Kingdom. Volis, S., 2016a. How to conserve threatened Chinese species with extremely small populations? Plant Divers. 38, 53e62. Volis, S., 2016b. Species-targeted plant conservation:time for conceptual integration. Isr. J. Plant Sci. 63, 232e249. Volis, S., 2018. Securing a future for China's plant biodiversity through an integrated conservation approach. Plant Divers. 40, 91e105. Wallace, L.E., 2004. A comparison of genetic variation and structure in the allopolyploid Platanthera huronensis and its diploid progenitors, Platanthera aquilonis and Platanthera dilatata (Orchidaceae). Can. J. Bot. 82, 244e252. Wang, H.R., Li, P., Li, J.L., Luo, Y.B., 2013. Characteristics of seeds and Hybrid seeds in three Sympatric Cypripedium species. Bull. Bot. Res. 33 (1), 31e38. Wang, S., Xie, Y., 2004. China Species Red List. Higher Education Press, Beijing. Wu, H., Li, Z., Huang, H., 2006. Genetic differentiation among natural populations of Gastrodia elata (Orchidaceae) in Hubei and germplasm assessment of the cultivated populations. Biodivers. Sci. 14, 315e326. Yao, X., Gao, L., Yang, B., 2007. Genetic diversity of wild Cymbidium goeringii(Orchidaceae) populations from Hubei based on inter-simple sequence repeats analysis. Front. Biol. China 2, 419e424. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||