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25 August 2019, Volume 41 Issue 04
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  • Articles
    Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae)
    Cen Guo, Zhen-Hua Guo, De-Zhu Li
    2019, 41(04):  213-219.  doi:10.1016/j.pld.2019.05.003
    Abstract ( 297 )   HTML ( )   PDF (1201KB) ( 111 )   Save
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    Shibataea is a genus of temperate bamboos (Poaceae:Bambusoideae) endemic to China, but little is known about its phylogenetic position and interspecific relationships. To elucidate the phylogenetic relationship of the bamboo genus Shibataea, we performed genome-scale phylogenetic analysis of all seven species and one variety of the genus using double digest restriction-site associated DNA sequencing (ddRAD-seq) and whole plastid genomes generated using genome skimming. Our phylogenomic analyses based on ddRAD-seq and plastome data congruently recovered Shibataea as monophyletic. The nuclear data resolved S. hispida as the earliest diverged species, followed by S. chinensis, while the rest of Shibataea can be further divided into two clades. However, the plastid and nuclear topologies conflict significantly. By comparing the results of network analysis and topologies reconstructed from different datasets, we identify S. kumasasa as the most admixed species, which may be caused by incomplete lineage sorting (ILS) or interspecific gene flow with four sympatric species. This study highlights the power of ddRAD and plastome data in resolving complex relationships in the intractable bamboo genus.
    Elevational changes in vascular plants richness, diversity, and distribution pattern in Abune Yosef mountain range, Northern Ethiopia
    Kflay Gebrehiwot, Sebsebe Demissew, Zerihun Woldu, Mekbib Fekadu, Temesgen Desalegn, Ermias Teferi
    2019, 41(04):  220-228.  doi:10.1016/j.pld.2019.06.005
    Abstract ( 328 )   HTML ( )   PDF (2723KB) ( 50 )   Save
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    The aim of this research is to investigate the patterns of vascular plant species richness, diversity, and distribution along an elevation gradient in the Abune Yosef mountain range, Ethiopia. Preferential systematic sampling was employed to collect vegetation and environmental data along the elevation gradient. We found that plant species richness declines monotonically from low to high elevations. Specifically, vascular plant species richness and diversity were lower in the Afroalpine grassland (high elevation) than in the Dry evergreen Afromontane forest and Ericaceous forest (low elevations). In contrast, endemic vascular plant richness was significantly higher in the Afroalpine grassland than in the Dry evergreen Afromontane forest and Ericaceous forest. Elevation showed a significant impact on the richness, diversity, and endemism of vascular plants. According to Sørensen's coefficient, the similarity between Dry evergreen Afromontane forest and Ericaceous forest vegetation types is higher (32%) than the similarity between Ericaceous forest and Afroalpine grassland (18%). Only 5% similarity was recorded between the Dry evergreen Afromontane forest and Afroalpine grassland. Growth forms showed different elevational richness patterns. Trees and liana increased monotonically up to 3300 m. Shrub and herb richness patterns followed a hump-shaped and inverted hump-shaped pattern along the elevation gradient. The elevation patterns of vascular plant species richness, diversity, and growth form in the present study may be attributed to differences in management intensity, spatial heterogeneity, microclimatic variations, and anthropogenic disturbances.
    Evaluating germinability of eight desert halophytes under long-term seed storage: Implications for conservation
    Sanjay Gairola, Hatem A. Shabana, Tamer Mahmoud, Ali El-Keblawy, Andrea Santo
    2019, 41(04):  229-236.  doi:10.1016/j.pld.2019.07.002
    Abstract ( 251 )   HTML ( )   PDF (624KB) ( 29 )   Save
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    Ex situ conservation in seed banks is a potential complementary conservation strategy for native plant species. It is well established that ex situ seed banking of native wild plants prolongs seed viability and thereby preserves genetic and species diversity for future use. We evaluated ex situ storage potential of eight halophytic species from deserts in the United Arab Emirates (UAE) by studying seed germination. Specifically, we examined the germinability of freshly collected seeds and seeds stored for three years in a seed bank. We also examined the effect of light conditions on fresh and stored seed germination. Fresh seeds of seven of the eight species tested had a higher germination rates under 12/12 h light/dark fluctuations than did those exposed to total darkness. Storage reduced light sensitivity in Halocnemum strobilaceum, Suaeda aegyptiaca, Salsola drummondii and Salsola imbricata, but increased the requirement for light in Arthrocnemum macrostachyum. In Anabasis setifera, storage decreased germination percentage when there was a 12-hour light/dark fluctuation, but increased germination rate when exposed to the dark treatment. Storage significantly reduced germination in both the light/dark and dark treatments in Suaeda vermiculata and S. aegyptiaca. Germination speed also responded differently to storage; whereas Timson's index significantly increased in A. macrostachyum and H. strobilaceum, it significantly decreased for S. drummondii, S. aegyptiaca and S. vermiculata. Germination of these species at a range of temperatures requires further testing; additionally, we strongly suggest that these laboratory findings be complemented by field studies.
    Forest characteristics and population structure of Glyptostrobus pensilis, a globally endangered relict species of southeastern China
    Cindy Q. Tang, Yongchuan Yang, Arata Momohara, Huan-Chong Wang, Hong Truong Luu, Shuaifeng Li, Kun Song, Shenhua Qian, Ben LePage, Yi-Fei Dong, Peng-Bin Han, Masahiko Ohsawa, Buu Thach Le, Huu Dang Tran, Minh Tri Dang, Ming-Chun Peng, Chong-Yun Wang
    2019, 41(04):  237-249.  doi:10.1016/j.pld.2019.06.007
    Abstract ( 250 )   HTML ( )   PDF (20566KB) ( 64 )   Save
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    The Chinese water pine Glyptostrobus pensilis is the sole surviving species of the genus Glyptostrobus. It is endemic to southern China, central Vietnam, and eastern Laos, and today it is nearly extinct in the wild. Forest community characteristics and population structure of G. pensilis in China have remained unknown up to now. We investigated six swamp forest stands and analyzed their forest community characteristics (i.e. vertical stratification, species composition, and diversity) and population structure, including the frequency distribution of DBH (diameter at breast height) and age-classes as found in Fujian Province, southeastern China.
    The vertical stratifications of all the forest stands were rather simple. The remaining wild specimens ranged from roughly 15 to some 357 years for an average of ca. 85 years, with only a few individuals less than 20 years old. Compared with the stands and populations of G. pensilis in Vietnam, the taxonomic compositions of the stands in the two regions were different, except for the dominant species-G. pensilis. The ShannoneWiener index showed the overstory of each stand had much lower diversity (0.26 on average) in Fujian Province than that (1.97 on average) in Vietnam, whereas the diversity indices were about the same (around 2.41) for the understories in the two regions. Furthermore, we discovered 18 G. pensilis seedlings at the study sites in Fujian Province. This discovery demonstrates that G. pensilis regeneration is extremely poor and its populations are declining, although these populations are relatively healthier than those in Vietnam.
    Elevation-related variation in the population characteristics of distylous Primula nivalis affects female fitness and inbreeding depression
    ysajan Abdusalam, Qing Jun Li
    2019, 41(04):  250-257.  doi:10.1016/j.pld.2019.06.004
    Abstract ( 264 )   HTML ( )   PDF (4058KB) ( 23 )   Save
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    The population characteristics of distylous species are highly sensitive to stochastic natural selection pressure. Therefore, populations growing under different environmental conditions may vary in floral morph ratios, potentially affecting female fitness and leading to inbreeding depression. However, the variation in offspring quality among populations as a result of inbreeding depression is poorly understood in distylous species. This study investigates variations in plant density, seed mass, seed viability, female fitness, and post-dispersal inbreeding depression in both sexual morphs (long-styled and shortstyled plants) of the distylous Primula nivalis that were subjected to different pollination treatments along an elevational gradient from 1657 to 2704 m a.s.l. Population characteristics (morph plant density and ratio) and fruit set were significantly affected by sexual morph and elevation. Plant density and fruit set frequencies were lower for short-styled than for long-styled plants at 2704 m a.s.l. The seeds from the cross-pollinated flowers of both morphs were higher in quality than those of self-pollinated flowers. The female fitness of seeds from cross-pollinated flowers of both morphs was higher than that of seeds from open-pollinated and self-pollinated flowers. The female fitness of seeds from long-styled flowers was higher than that of seeds from short-styled flowers at all elevations. Inbreeding depression increased with elevation among plants with short-styled flowers but not among those with long-styled flowers. Variation in the elevation-dependent mating system might influence female fitness and affect inbreeding depression in both floral morphs. In conclusion, the low quality of seeds from short-styled flowers at high elevations might decrease short-styled flower frequency, affecting population characteristics.
    Stem and leaf traits as co-determinants of canopy water flux
    Jianguo Gao, Kai Tian
    2019, 41(04):  258-265.  doi:10.1016/j.pld.2019.06.003
    Abstract ( 222 )   HTML ( )   PDF (20727KB) ( 49 )   Save
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    Transpiration through stomata in tree canopies plays an important role in terrestrial water cycles. However, the empirical relationship between leaf stomata anatomy and canopy stomatal conductance (Gs) is surprisingly rare, thereby the underlying biological mechanisms of terrestrial water flux are not well elucidated. To gain further insight into these mechanisms, we reanalyzed the dataset of Gs previously reported by Gao et al. (2015) using a quantile regression model. The results indicated that the reference Gs (Gsref, Gs at 1 kPa) was negatively correlated with wood density at each quantile, which confirmed previous data; however, Gsref was significantly correlated with stomatal density at the 0.6 quantile, i.e., 450 stomata mm-2. This highlighted the potential of using stomatal density as a trait to predict canopy water flux. A conceptual model of co-determinants of xylem and stomatal morphology suggests that these traits and their coordination may play a critical role in determining tree growth, physiological homeostatic response to environmental variables, water use efficiency, and drought resistance.
    Heterologous expression of HpBHY and CrBKT increases heat tolerance in Physcomitrella patens
    Jianfang He, Ping Li, Heqiang Huo, Lina Liu, Ting Tang, Mingxia He, Junchao Huang, Li Liu
    2019, 41(04):  266-274.  doi:10.1016/j.pld.2019.04.001
    Abstract ( 287 )   HTML ( )   PDF (4415KB) ( 32 )   Save
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    Heat stress can restrict plant growth, development, and crop yield. As essential plant antioxidants, carotenoids play significant roles in plant stress resistance. b-carotene hydroxylase (BHY) and b-carotene ketolase (BKT), which catalyze the conversions of b-carotene to zeaxanthin and b-carotene to canthaxanthin, respectively, are key enzymes in the carotenoid biosynthetic pathway, but little is known about their potential functions in stress resistance. Here, we investigated the roles of b-carotene hydroxylase and b-carotene ketolase during heat stress in Physcomitrella patens through expressing a b-carotene ketolase gene from Chlamydomonas reinhardtii (CrBKT) and a b-carotene hydroxylase gene from Haematococcus pluvialis (HpBHY) in the moss P. patens. In transgenic moss expressing these genes, carotenoids content increased (especially lutein content), and heat stress tolerance increased, with reduced leafy tissue necrosis. To investigate the mechanism of this heat stress resistance, we measured various physiological indicators and found a lower malondialdehyde level, higher peroxidase and superoxide dismutase activities, and higher endogenous abscisic acid and salicylate content in the transgenic plants in response to high-temperature stress. These results demonstrate that CrBKT and HpBHY increase plant heat stress resistance through the antioxidant and damage repair metabolism, which is related to abscisic acid and salicylate signaling.
    Comparative expression analysis of heavy metal ATPase subfamily genes between Cd-tolerant and Cd-sensitive turnip landraces
    Yuansheng Wu, Xiong Li, Di Chen, Xi Han, Boqun Li, Yonghong Yang, Yongping Yang
    2019, 41(04):  275-283.  doi:10.1016/j.pld.2019.02.001
    Abstract ( 233 )   HTML ( )   PDF (4014KB) ( 37 )   Save
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    The heavy metal ATPase (HMA) subfamily is mainly involved in heavy metal (HM) tolerance and transport in plants, but an understanding of the definite roles and mechanisms of most HMA members are still limited. In the present study, we identified 14 candidate HMA genes named BrrHMA1-BrrHMA8 from the turnip genome and analyzed the phylogeny, gene structure, chromosome distribution, and conserved domains and motifs of HMAs in turnip (Brassica rapa var. rapa). According to our phylogenetic tree, the BrrHMAs are divided into a Zn/Cd/Co/Pb subclass and Cu/Ag subclass. The BrrHMA members show similar structural characteristics within subclasses. To explore the roles of BrrHMAs in turnip, we compared the gene sequences and expression patterns of the BrrHMA genes between a Cd-tolerant landrace and a Cd-sensitive landrace. Most BrrHMA genes showed similar spatial expression patterns in both Cd-tolerant and Cd-sensitive turnip landraces; some BrrHMA genes, however, were differentially expressed in specific tissue in Cd-tolerant and Cd-sensitive turnip. Specifically, BrrHMA genes in the Zn/Cd/Co/Pb subclass shared the same coding sequence but were differentially expressed in Cd-tolerant and Cd-sensitive turnip landraces under Cd stress. Our findings suggest that the stable expression and up-regulated expression of BrrHMA Zn/Cd/Co/Pb subclass genes under Cd stress may contribute to the higher Cd tolerance of turnip landraces.