[1] Cheng, R.Y., Xie, D.F., Zhang, X.Y., et al., 2022. Comparative plastome analysis of three Amaryllidaceae subfamilies: insights into variation of genome characteristics, phylogeny, and adaptive evolution. BioMed Res. Int. 24, 3909596.
[2] Cheon, S., Zhang, J.Z., Park, C., 2020. Is phylotranscriptomics as reliable as phylogenomics? Mol. Biol. Evol. 37, 3672-3683.
[3] Friesen, N., Fritsch, R.M., Blattner, F.R., 2006. Phylogeny and new intrageneric classification of Allium (Alliaceae) based on nuclear ribosomal DNA ITS sequences. Aliso 22, 372-395.
[4] Friesen, N., Smirnov, S.V., Leweke, M., et al., 2021. Taxonomy and phylogenetics of Allium section Decipientia (Amaryllidaceae): morphological characteristics do not reflect the evolutionary history revealed by molecular markers. Bot. J. Linn. Soc. 197, 190-228.
[5] Fritsch, R.M., Abbasi, M., 2013. A taxonomic review of Allium subg. Melanocrommyum in Iran. - IPK, Gatersleben Press, Germany.
[6] Fritsch R.M., Friesen N., 2002. Evolution, domestication and taxonomy. In: Rabinowitch, H.D., Currah, L. (Eds). Allium Crop Science: Recent Advances. CABI Publishing, Wallingford, Oxfordshire, UK, pp. 5-30.
[7] Govaerts, R., Kington, S., Friesen, N., et al., 2021. World Checklist of Amaryllidaceae Family. Facilitated by the Royal Botanic Gardens, Kew, UK. https://powo.science.kew.org/results?q=Allium.
[8] Han, T.S., Zheng, Q.J., Onstein, R.E., et al., 2019. Polyploidy promotes species diversification of Allium through ecological shifts. New Phytol. 225, 571-583.
[9] Hauenschild, F., Favre, A., Schnitzler, J., et al., 2017. Spatio-temporal evolution of Allium L. in the Qinghai-Tibet plateau region: immigration and in situ radiation. Plant Divers. 39, 167-179.
[10] Herden, T., Hanelt, P., Friesen, N., 2016. Phylogeny of Allium L. Subgenus Anguinum (G. Don. Ex W.D.J. Koch) N. Friesen (amaryllidaceae). Mol. Phylogenet. Evol. 95, 79e93.
[11] Li, M.J., Yu, H.X., Guo, X.L., et al., 2021a. Out of the qinghai-Tibetan plateau and rapid radiation across eurasia for Allium section daghestanica (amaryllidaceae). AoB Plants 13, plab017.
[12] Li, M.J., Zheng, Z.Y., Liu, J.C., et al., 2021b. Evolutionary origin of a tetraploid Allium species on the qinghai-tibet plateau. Mol. Ecol. 30, 5780-5795.
[13] Jang, J.E., Baasanmunkh, S., Nyamgerel, N., et al., 2023. Flower morphology of Allium (Amaryllidaceae) and its systematic significance. Plant Divers. https://doi.org/10.1016/j.pld.2023.06.009.
[14] Li, M.J., Tan, J.B., Xie, D.F., et al., 2016. Revisiting the evolutionary events in Allium subgenus Cyathophora (Amaryllidaceae): insights into the effect of the Hengduan Mountains Region (HMR) uplift and Quaternary climatic fluctuations to the environmental changes in the Qinghai-Tibet Plateau. Mol. Phylogenet. Evol. 94, 802-813.
[15] Li, Q.Q., Zhou, S.D., He, X.J., et al., 2010. Phylogeny and biogeography of Allium (Amaryllidaceae: allieae) based on nuclear ribosomal internal transcribed spacer and chloroplast rps16 sequences, focusing on the inclusion of species endemic to China. Ann. Bot. 106, 709-773.
[16] Liao, N.Q., Hu, Z.Y., Miao, J.S., et al., 2022. Chromosome-level genome assembly of bunching onion illuminates genome evolution and flavor formation in Allium crops. Nat. Commun. 13, 6690.
[17] Seregin, A.P., Anackov, G., Friesen, N., 2015. Molecular and morphological revision of the Allium saxatile group (Amaryllidaceae): geographical isolation as the driving force of underestimated speciation. Bot. J. Linn. Soc. 178, 67-101.
[18] Sinitsyna, T.A., Herden, T., Friesen, N., 2016. Dated phylogeny and biogeography of the eurasian Allium section Rhizirideum (amaryllidaceae). Plant Syst. Evol. 302, 1311e1328.
[19] Sun, X.D., Zhu, S.Y., Li, N.Y., et al., 2020. A chromosome-level genome assembly of garlic (Allium sativum) provides insights into genome evolution and allicin biosynthesis. Mol. Plant 13, 12.
[20] Xie, D.F., Tan, J.B., Yu, Y., et al., 2020. Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences. Ann. Bot. 125, 1039e1055.
[21] Yang, J.Y., Kim, S.H., Gol, H.Y., et al., 2023. New insights into the phylogenetic relationships among wild onions (Allium, Amaryllidaceae), with special emphasis on the subgenera Angunium and Rhizirideum, as revealed by plastid genomes. Front. Plant Sci. 14, 1124277.
[22] Zhang, Z.Z., Liu, G., Li, M.J., 2023. Phylotranscriptomic discordance is best explained by incomplete lineage sorting within Allium subgenus Cyathophora and thus hemiplasy accounts for interspecific trait transition, Plant Divers. https://doi.org/10.1016/j.pld.2023.07.004. |
