Plant Diversity ›› 2021, Vol. 43 ›› Issue (04): 292-298.DOI: 10.1016/j.pld.2021.04.003
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Yu-Hang Changa,b, Gang Yaoa,b, Jens Neilsenc, De-Tuan Liua,b, Lu Zhangd, Yong-Peng Maa,b
Received:
2020-09-28
Revised:
2021-04-07
Online:
2021-08-25
Published:
2021-09-07
Contact:
Yong-Peng Ma
Supported by:
Yu-Hang Chang, Gang Yao, Jens Neilsen, De-Tuan Liu, Lu Zhang, Yong-Peng Ma. Rhododendron kuomeianum (Ericaceae), a new species from northeastern Yunnan (China), based on morphological and genomic data[J]. Plant Diversity, 2021, 43(04): 292-298.
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Bradbury, P.J., Zhang, Z.W., Kroon, D.E., et al., 2007. TASSEL:software for association mapping of complex traits in diverse samples. Bioinformatics 23, 2633-2635. Cai, L., Neilsen, J., Dao, Z.L., et al., 2016. Rhododendron longipedicellatum (Ericaceae), a new species from Southeastern Yunnan, China. Phytotaxa 282, 296-300. Chamberlain, D.F., Hyam, R., Argent, G., et al., 1996. The genus Rhododendron:its classification and synonymy. Royal Botanic Garden Edinburgh, Edinburgh, pp. 181. Chen, X., Huang, J.Y., Consaul, L., et al., 2010. Two new species of Rhododendron (Ericaceae) from Guizhou, China. Novon 20, 386-391. Chen, X., Huang, J.Y., Xie, H., et al., 2012. Rhododendron cochlearifolium (Ericaceae), a new species from China. Ann. Bot. Fenn. 49, 397-402. Danecek, P., Auton, A., Abecasis, G., et al., 2011. The variant call format and VCFtools. Bioinformatics 15, 2156-2158. Doyle, J., 1991. DNA protocols for plants-CTAB total DNA isolation. In:Hewitt GM, Johnston A eds. Molecular techniques in taxonomy. Berlin:Springer. pp. 283-293. Du, C., Liao S., Boufford D.E., et al., 2020, Twenty years of Chinese vascular plant novelties, 2000 through 2019. Plant Divers. 42, 393-398. Fang, W.P., 1983. New taxa of the genus Rhododendron from China. Act. Phytotax. Sin. 21, 457-469. Fang, R.Z., Min, T.L., 1995. The floristic study on the genus Rhododendron. Act. Bot. Yunnan. 17, 359-379. Fang, M.Y., Fang, R.C., He, M.Y., et al.,2005. Ericaceae. In:Wu, Z.Y., Raven, P.H., Hong, D.Y. (Eds.), Flora of China, vol. 14. Science Press, Beijing & Missouri Botanical garden Press, St. louis, pp. 260-455. Gao, L.M., Li, D.Z., 2009. Rhododendron qiaojiaense (Ericaceae), a new species from Yunnan, China. Ann. Bot. Fenn. 46, 67-70. Gao, L.M., Zhang, S.D., 2008. Rhododendron yaoshanense (Ericaceae), a new species from NE Yunnan, China. Ann. Bot. Fenn. 45, 204-206. Gao, L.M., Li, D.Z., Zhang, C.Q., 2003. Phylogenetic relationships of Rhododendron section Azaleastrum (Ericaceae) based on ITS sequences. Act. Phytotax. Sin. 41, 173-179. Geng, Y.Y., 2004. New synonymies in the genus Rhododendron from China. Act. Phytotax. Sin. 42, 566-570. Geng, Y.Y., 2014. The genus Rhododendron of China. Shanghai Scientific and Technical Publishers, Shanghai, pp. 328-347. Gibbs, D., Chamberlain, D., Argent, G., et al., 2011. The red list of rhododendrons. Botanic Gardens Conservation International, Richmond, UK, p. 57. Guo, C., Ma, P.F., Yang, G.Q., et al., 2020. Parallel ddRAD and genome skimming analyses reveal a radiative and reticulate evolutionary history of the temperate bamboos. https://doi.org/Syst.Biol.10.1093/sysbio/syaa076. Heckenhauer, J., Samuel, R., Aston, P.S., et al., 2018. Phylogenomics resolves evolutionary relationships and provides insights into floral evolution in the tribe Shoreeae (Dipterocarpaceae). Mol. Phylogenet. Evol. 127, 1-13. Hoang, D.T., Chernomor, O., Von, Haeseler. A., et al., 2018. UFBoot2:Improving the ultrafast bootstrap approximation. Mol. Biol. Evol. 2, 518-522. Hohenlohe, P., A., Bassham, S., Etter, P., D., et al., 2010. Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet. 6, e1000862. IUCN Standards and Petitions Committee., 2019. Guidelines for using the IUCN red list categories and criteria. Version 14. Prepared by the Standards and petitions committee of the IUCN species survival commission. http://www.iucnredlist.org/documents/RedListGuidelines.pdf. Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K., et al., 2017. ModelFinder:fast model selection for accurate phylogenetic estimates. Nat. Methods 6, 587-589. Li, G.Z., 1995. A revison and geographical distribution of the genus Rhododendron in Guangxi. Guihaia 15, 193-208. Liao, R.L., Xue, D., Neilsen, J., et al., 2015. A new species of Rhododendron (Ericaceae) from Shangri-La, NW Yunnan, China. Phytotaxa 238, 293-297. Liu, R.L., Zhong, B.T., Gao, L.M., 2018. A new species of Rhododendron (Ericaceae) from Jiangxi of China based on morphological and molecular evidences. Phytotaxa 4, 267-275. Liu, D.T., Zhang, L., Wang, J.H., et al., 2020. Conservation genomics of a threatened Rhododendron:contrasting patterns of population structure revealed from neutral and selected SNPs. Front. Genet. 11, 757. Ma, Y.P., Wu, Z.K., Xue, R.J., et al., 2013. A new species of Rhododendron (Ericaceae) from the Gaoligong Mountains, Yunnan, China, supported by morphological and DNA barcoding data. Phytotaxa 114, 42-50. Ma, Y.P., Chamberlain, D.F., Sun, W.B., et al., 2015. A new species of Rhododendron (Ericaceae) from Baili Rhododendron nature reserve, NW Guizhou, China. Phytotaxa 195, 197-200. Marczewski, T., Ma, Y.P., Zhang, X.M., et al., 2016. Why is population information crucial for taxonomy? A case study involving a hybrid swarm and related varieties. AoB Plants 8, 1-17. Miller, M.R., Dunham, J.P., Amores, A., et al., 2007. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA(RAD) markers. Genome Res.2, 240-248. Minh, B.Q., Schmidt, H.A., Chernomor, O., et al., 2020. IQ-TREE 2:New models and efficient methods for phylogenetic inference in the genomicera. Mol. Biol. Evol. 37, 1530-1534. Price, M.N., Dehal, P.S., Arkin, A.P., 2010. FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments. PLoS One 3, e9490. Rochette, N.C., Catchen, J.M., 2017. Deriving genotypes from Rad-seq short-read data using stacks. Nat. Protoc. 12, 2640-2659. Rochette, N.C., Rivera-Colon, A.G., Catchen, J. M., 2019. Stacks 2:Analytical methods for paired-end sequencing improve RADseq-based population genomics. Mol. Ecol. 21, 4737-4754. Tajima, T., 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595. Tian, X.L., Chang, Y.H., Neilsen, J., et al., 2019. A new species of Rhododendron (Ericaceae) from northeastern Yunnan, China. Phytotaxa 395, 66-70. Yan, L.J., Liu, J., Moller, M., et al., 2014. DNA barcoding of Rhododendron (Ericaceae), the largest Chinese plant genus in biodiversity hotspots of the Himalaya-Hengduan Mountains. Mol. Ecol. Res. 15, 932-944. Zhang, J.L., Ma, Y.P., Wu, Z.K., et al., 2017. Natural hybridization and introgression among sympatrically distributed Rhododendron species in Guizhou, China. Biochem. Syst. Ecol. 70, 268-273. Zhang N.N., Ma Y.P., Folk. R.A., et al., 2018. Maintenance of species boundaries in three sympatric Ligularia (Senecioneae, Asteraceae) species. J. Integer. Plant Biol. 60, 986-999. |
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