Phylogenetic relationship, biogeography, and conservation genetics of endangered Fraxinus chiisanensis (Oleaceae), endemic to South Korea

doi:10.1016/j.pld.2021.06.004

Plant Diversity ›› 2022, Vol. 44 ›› Issue (02): 170-180.DOI: 10.1016/j.pld.2021.06.004

Phylogenetic relationship, biogeography, and conservation genetics of endangered Fraxinus chiisanensis (Oleaceae), endemic to South Korea

Changkyun Kim^a, Dong-Kap Kim^b, Hang Sun^c, Joo-Hwan Kim^d

a Plant Research Division, Honam National Institute of Biological Resources, Mokpo 58762, Republic of Korea;
b Forest Biodiversity Division, Korea National Arboretum, Pocheon 11186, Republic of Korea;
c CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, Yunnan, PR China;
d Department of Life Science, Gachon University, Seongnam 13120, Republic of Korea

收稿日期:2021-01-24 修回日期:2021-06-03 出版日期:2022-04-25 发布日期:2022-04-24
通讯作者: Joo-Hwan Kim,E-mail:kimjh2009@gachon.ac.kr
基金资助:
The authors thank Drs. S. Kikuchi, S. Kanetani, and J. Worth (Forestry and Forest Products Research Institute) for help in collecting plant material. This work was supported by grants from the Korea National Arboretum (Grant no. KNA1-1-13,14-1) and Gachon University (Grant no. 2018-0320) to J-H Kim.

Phylogenetic relationship, biogeography, and conservation genetics of endangered Fraxinus chiisanensis (Oleaceae), endemic to South Korea

Changkyun Kim^a, Dong-Kap Kim^b, Hang Sun^c, Joo-Hwan Kim^d

a Plant Research Division, Honam National Institute of Biological Resources, Mokpo 58762, Republic of Korea;
b Forest Biodiversity Division, Korea National Arboretum, Pocheon 11186, Republic of Korea;
c CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, Yunnan, PR China;
d Department of Life Science, Gachon University, Seongnam 13120, Republic of Korea

Received:2021-01-24 Revised:2021-06-03 Online:2022-04-25 Published:2022-04-24
Contact: Joo-Hwan Kim,E-mail:kimjh2009@gachon.ac.kr
Supported by:
The authors thank Drs. S. Kikuchi, S. Kanetani, and J. Worth (Forestry and Forest Products Research Institute) for help in collecting plant material. This work was supported by grants from the Korea National Arboretum (Grant no. KNA1-1-13,14-1) and Gachon University (Grant no. 2018-0320) to J-H Kim.

摘要/Abstract

摘要： Endemic plants are important for understanding phylogenetic relationships, biogeographical history, and genetic variation because of their restricted distribution and their role in conserving biodiversity. Here, we investigated the phylogenetic relationships of the Korean endemic Fraxinus chiisanensis by reconstructing the molecular phylogeny of Fraxinus based on two nuclear DNA (nrITS and phantastica) and two chloroplast DNA (psbA-trnH and rpl32-trnL) regions. Within our fossil-calibrated phylogenetic framework, we also inferred the biogeographical history of F. chiisanensis. To provide a scientific basis for the conservation of F. chiisanensis, we determined the levels of genetic diversity and genetic differentiation in this species. Combining information from nuclear and chloroplast DNA sequence data, our molecular phylogenetic analyses identified F. chiisanensis as a genetically distinct unit from its sister group, Fraxinus platypoda from Japan. Our molecular dating analyses using nuclear and chloroplast DNA data sets show F. chiisanensis diverged from its sister F. platypoda in the Early or Middle Miocene and differentiated in the Late Miocene on the Korean Peninsula. Our results suggest that the divergence of F. chiisanensis was associated with the submergence of the East China Sea land bridge and enhanced monsoons in East Asia. When compared to F. platypoda, F. chiisanensis exhibits low genetic diversity within populations and high genetic differentiation among populations. These results help us to understand the evolutionary history of F. chiisanensis and to develop a conservation strategy for this species.

关键词: East China Sea land bridge, Endemic species, Fraxinus chiisanensis, Korean Peninsula, Genetic diversity, Biogeography

Abstract: Endemic plants are important for understanding phylogenetic relationships, biogeographical history, and genetic variation because of their restricted distribution and their role in conserving biodiversity. Here, we investigated the phylogenetic relationships of the Korean endemic Fraxinus chiisanensis by reconstructing the molecular phylogeny of Fraxinus based on two nuclear DNA (nrITS and phantastica) and two chloroplast DNA (psbA-trnH and rpl32-trnL) regions. Within our fossil-calibrated phylogenetic framework, we also inferred the biogeographical history of F. chiisanensis. To provide a scientific basis for the conservation of F. chiisanensis, we determined the levels of genetic diversity and genetic differentiation in this species. Combining information from nuclear and chloroplast DNA sequence data, our molecular phylogenetic analyses identified F. chiisanensis as a genetically distinct unit from its sister group, Fraxinus platypoda from Japan. Our molecular dating analyses using nuclear and chloroplast DNA data sets show F. chiisanensis diverged from its sister F. platypoda in the Early or Middle Miocene and differentiated in the Late Miocene on the Korean Peninsula. Our results suggest that the divergence of F. chiisanensis was associated with the submergence of the East China Sea land bridge and enhanced monsoons in East Asia. When compared to F. platypoda, F. chiisanensis exhibits low genetic diversity within populations and high genetic differentiation among populations. These results help us to understand the evolutionary history of F. chiisanensis and to develop a conservation strategy for this species.

Key words: East China Sea land bridge, Endemic species, Fraxinus chiisanensis, Korean Peninsula, Genetic diversity, Biogeography

Changkyun Kim, Dong-Kap Kim, Hang Sun, Joo-Hwan Kim. Phylogenetic relationship, biogeography, and conservation genetics of endangered Fraxinus chiisanensis (Oleaceae), endemic to South Korea[J]. Plant Diversity, 2022, 44(02): 170-180.

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Phylogenetic relationship, biogeography, and conservation genetics of endangered Fraxinus chiisanensis (Oleaceae), endemic to South Korea

Phylogenetic relationship, biogeography, and conservation genetics of endangered Fraxinus chiisanensis (Oleaceae), endemic to South Korea

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