Plant Diversity ›› 2024, Vol. 46 ›› Issue (01): 59-69.DOI: 10.1016/j.pld.2023.07.006
• Articles • Previous Articles Next Articles
Haibin Yua, Man Yanga, Zixin Lua, Weitao Wangb, Fangyuan Yuc, Yonghua Zhangd, Xue Yinb, Hongjun Yua, Junjie Hua, David C. Deanee
Received:
2023-02-13
Revised:
2023-07-13
Online:
2024-01-25
Published:
2024-03-02
Contact:
Haibin Yu,E-mail:yuhb.18b@gzhu.edu.cn
Supported by:
Haibin Yu, Man Yang, Zixin Lu, Weitao Wang, Fangyuan Yu, Yonghua Zhang, Xue Yin, Hongjun Yu, Junjie Hu, David C. Deane. A phylogenetic approach identifies patterns of beta diversity and floristic subregions of the Qinghai-Tibet Plateau[J]. Plant Diversity, 2024, 46(01): 59-69.
Add to citation manager EndNote|Ris|BibTeX
[1] Baselga, A., 2010. Partitioning the turnover and nestedness components of beta diversity. Global Ecol. Biogeogr. 19, 134-143. [2] Baselga, A., Orme, C.D.L., 2012. betapart: an R package for the study of beta diversity. Methods Ecol. Evol. 3, 808-812. [3] Brown, J. L., Cameron, A., Yoder, A. D., et al. 2014. A necessarily complex model to explain the biogeography of the amphibians and reptiles of Madagascar. Nat. Commun. 5, 5046. [4] Brown, J.L., Bennett, J.R., French, C.M., 2017. SDMtoolbox 2.0: the next generation Python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses. PeerJ 5, e4095. [5] Buckley, L.B., Jetz, W., 2008. Linking global turnover of species and environments. Proc. Natl. Acad. Sci. U.S.A. 105, 17836-17841. [6] Chao, A., Chazdon, R.L., Colwell, R.K. et al., 2005. A new statistical approach for assessing similarity of species composition with incidence and abundance data. Ecol. Lett. 8, 148-159. [7] Chen, Z., Yang, T., Lin, L., et al. 2016. Tree of life for the genera of Chinese vascular plants. J. Syst. Evol. 54, 277-306. [8] Crisp, M.D., Cook, L.G., 2012. Phylogenetic niche conservatism: what are the underlying evolutionary and ecological causes? New Phytol. 196, 681-694. [9] Daru, B. H., Karunarathne, P., Schliep, K., 2020. phyloregion: R package for biogeographical regionalization and macroecology. Methods Ecol. Evol. 11, 1483-1491. [10] Deng, T., Ding, L., 2015. Paleoaltimetry reconstructions of the Tibetan Plateau: Progress and contradictions. Natl. Sci. Rev. 2, 417-437. [11] Ding, W.N., Ree, R.H., Spicer, R.A., et al., 2020. Ancient orogenic and monsoon-driven assembly of the world’s richest temperate alpine flora. Science 369, 578-581. [12] Du, W., Jia, P., Du, G. 2022. Current patterns of plant diversity and phylogenetic structure on the Kunlun Mountains. Plant Divers. 44, 30-38. [13] Fick, S.E., Hijmans, R.J., 2017. WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas. Int. J. Climatol. 37, 4302-4315. [14] Fine, P.V., 2015. Ecological and evolutionary drivers of geographic variation in species diversity. Annu. Rev. Ecol. Evol. Syst. 46, 369-392. [15] Gonzalez-Trujillo, J.D., Saito, V.S., Petsch, D.K., et al., 2021. Historical legacies and contemporary processes shape beta diversity in Neotropical montane streams. J. Biogeogr. 48, 101-117. [16] Graham, C.H., Fine, P.V., 2008. Phylogenetic beta diversity: linking ecological and evolutionary processes across space in time. Ecol. Lett. 11, 1265-1277. [17] Greve, M., Lykke, A.M., Blach-Overgaard, A., et al., 2011. Environmental and anthropogenic determinants of vegetation distribution across Africa. Global Ecol. Biogeogr. 20, 661-674. [18] Hu, Y., Fan, H., Chen, Y., et al., 2021. Spatial patterns and conservation of genetic and phylogenetic diversity of wildlife in China. Sci. Adv. 7, eabd5725. [19] Jankowski, J.E., Ciecka, A.L., Meyer, N.Y., et al., 2009. Beta diversity along environmental gradients: implications of habitat specialization in tropical montane landscapes. J. Anim. Ecol. 78, 315-327. [20] Jenkins, C.N., Pimm, S.L., Joppa, L.N., 2013. Global patterns of terrestrial vertebrate diversity and conservation. Proc. Natl. Acad. Sci. U.S.A. 110, 2602-2610. [21] Jin, Y., Qian, H., 2019. V.PhyloMaker: an R package that can generate very large phylogenies for vascular plants. Ecography 42, 1353-1359. [22] Jin, Y., Qian, H. 2022. V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants. Plant Divers. 44, 335-339. [23] Jin, Y., Qian, H. 2023. U.PhyloMaker: An R package that can generate large phylogenetic trees for plants and animals. Plant Divers. 45, 347-352. [24] Kreft, H., Jetz, W., 2007. Global patterns and determinants of vascular plant diversity. Proc. Natl. Acad. Sci. U.S.A. 104, 5925-5930. [25] Lai, J., Zou, Y., Zhang, J., et al., 2022. Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca. hp R package. Methods Ecol. Evol. 13, 782-788. [26] Li, F., Lu, H., Wang, G., et al. 2022. Zoning of precipitation regimes on the Qinghai-Tibet Plateau and its surrounding areas responded by the vegetation distribution. Sci. Total Environ. 838, 155844. [27] Li, N., Chu, H., Qi, Y., et al., 2019. Alpha and beta diversity of birds along elevational vegetation zones on the southern slope of Altai Mountains: Implication for conservation. Glob. Ecol. Conserv. 19, e00643. [28] Liu, J., Lindenmayer, D.B., Yang, W., et al. 2019. Diversity and density patterns of large old trees in China. Sci. Total Environ. 655, 255-262. [29] Liu, J.Q., Sun, Y.S., Ge, X.J., et al., 2012. Phylogeographic studies of plants in China: advances in the past and directions in the future. J. Syst. Evol. 50, 267-275. [30] Losos, J.B., 2008. Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species. Ecol. Lett. 11, 995-1003. [31] Lu, L., Mao, L., Yang, T., et al., 2018. Evolutionary history of the angiosperm flora of China. Nature 554, 234-238. [32] Mazel, F., Wuest, R.O., Lessard, J.P., et al., 2017. Global patterns of β-diversity along the phylogenetic time-scale: The role of climate and plate tectonics. Global Ecol. Biogeogr. 26, 1211-1221. [33] Mittermeier, R.A., Turner, W.R., Larsen, F.W., et al., 2011. Global biodiversity conservation: the critical role of hotspots. In: Zachos, F.E., Habel, J.C. (Eds.), Biodiversity Hotspots. Springer Publishers, London, pp. 3-22. [34] Oksanen, J., Blanchet, F.G., Kindt, R., et al., 2013. Package ‘vegan’. Community Ecology package, version, 2, 1-295. [35] Pinto-Ledezma, J.N., Larkin, D.J., Cavender-Bares, J., 2018. Patterns of beta diversity of vascular plants and their correspondence with biome boundaries across North America. Front. Ecol. Evol. 6, 194. [36] Qian, H., Jin, Y., Leprieur, F., et al., 2020. Geographic patterns and environmental correlates of taxonomic and phylogenetic beta diversity for large-scale angiosperm assemblages in China. Ecography 43, 1706-1716. [37] Qian, H., Ricklefs, R.E., 2007. A latitudinal gradient in large-scale beta diversity for vascular plants in North America. Ecol. Lett. 10, 737-744. [38] Qiu, Y.X., Fu, C.X., Comes, H.P., 2011. Plant molecular phylogeography in China and adjacent regions: tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora. Mol. Phylogenet. Evol. 59, 225-244. [39] Quintero, I., Jetz, W., 2018. Global elevational diversity and diversification of birds. Nature 555, 246-250. [40] R Core Team, 2019. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna. Available online at: http://www.R-project.org/. [41] Rangel, T.F., Diniz-Filho, J.A.F., Bini, L.M., 2010. SAM: a comprehensive application for spatial analysis in macroecology. Ecography 33, 46-50. [42] Rumpf, S.B., Hulber, K., Wessely, J., et al., 2019. Extinction debts and colonization credits of non-forest plants in the European Alps. Nat. Commun. 10, 4293. [43] Si, X., Zhao, Y., Chen, C., et al., 2017. Beta-diversity partitioning: methods, applications and perspectives. Biodiver. Sci. 25, 464-480. [44] Smith, S.A., Brown, J.W., 2018. Constructing a broadly inclusive seed plant phylogeny. Am. J. Bot. 105, 302e314. [45] Soininen, J., Heino,·J. Wang, J.J., 2018. A meta-analysis of nestedness and turnover components of beta diversity across organisms and ecosystems. Global Ecol. Biogeogr. 27, 96-109. [46] Spicer, R.A., Farnsworth, A., Su, T., 2020. Cenozoic topography, monsoons and biodiversity conservation within the Tibetan Region: An evolving story. Plant Divers. 42, 229-254. [47] The Angiosperm Phylogeny Group, Chase, M.W., Christenhusz, M., et al., 2016. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Bot. J. Linn. Soc. 181, 1-20. [48] The China Vegetation Atlas Editorial Committee, Chinese Academy of Sciences., 2001. Atlas of China Vegetation (1:1,000,000). Science Press, Beijing. [49] Wu, Z., Sun, H., Zhou, Z., et al., 2010a. Floristics of Seed Plants from China. Science Press, Beijing. [50] Wu, Z.Y., Wu, S.G., 1996. A proposal for a new floristic kingdom (realm): the East Asiatic Kingdom, its delineation and characteristics. In: Zhang, A.L., Wu, S.G. (Eds.), Floristic Characteristics and Diversity of East Asian Plants, Proceedings of the First International Symposium on Floristic Characteristics and Diversity of East Asian Plants. China Higher Education Press, Beijing, pp. 3–42. [51] Xu, W.B., Guo, W.Y., Serra-Diaz, J.M., et al., 2020. Quaternary climate change explains global patterns of tree beta-diversity. bioRxiv. [52] Yang, Y., Ferguson, D.K., Liu, B., et al., 2022. Recent advances on phylogenomics of gymnosperms and an updated classification. Plant Divers. 44, 340-350. [53] Ye, J., Lu, L., Liu, B., et al., 2019. Phylogenetic delineation of regional biota: A case study of the Chinese flora. Mol. Phylogenet. Evol. 135, 222-229. [54] Yu, H., Deane, D.C., Sui, X., et al., 2019. Testing multiple hypotheses for the high endemic plant diversity of the Tibetan Plateau. Glob. Ecol. Biogeogr. 28, 131-144. [55] Yu, H., Deane, D.C., Zhang, Y., et al., 2021. Integrating multiple indices of geobiodiversity reveals a series of regional species-rich areas worthy of conservation in the region of the Qinghai-Tibet Plateau. Biol. Conserv. 261, 109238. [56] Yu, H., Miao, S., Xie, G., et al., 2020. Contrasting floristic diversity of the Hengduan Mountains, the Himalayas and the Qinghai-Tibet Plateau sensu stricto in China. Front. Ecol. Evol. 8, 136. [57] Zanne, A.E., Tank, D.C., Cornwell, W.K., et al., 2014. Three keys to the radiation of angiosperms into freezing environments. Nature 506, 89-92. [58] Zeng, C., Li, W., Ding, P., et al., 2022. A landscape-level analysis of bird taxonomic, functional and phylogenetic β-diversity in habitat island systems. J. Biogeogr. 49, 1162-1175. [59] Zhang, D.C., Ye, J.X., Sun, H., 2016. Quantitative approaches to identify floristic units and centres of species endemism in the Qinghai-Tibetan Plateau, south-western China. J. Biogeogr. 43, 2465-2476. [60] Zhang, Y., Li, B., Zheng, D., 2002. A discussion on the boundary and area of the Tibetan Plateau in China. Geogr. Res. 21, 1-8. [61] Zheng, B., Xu, Q., Shen, Y., 2002. The relationship between climate change and Quaternary glacial cycles on the Qinghai-Tibetan Plateau: review and speculation. Quat. Int. 97, 93-101. [62] Zheng, D., 2008. Ecogeographical Regional System in China. Commercial Press, Beijing. |
[1] | Karla J.P. Silva-Souza, Maíra G. Pivato, Vinícius C. Silva, Ricardo F. Haidar, Alexandre F. Souza. New patterns of the tree beta diversity and its determinants in the largest savanna and wetland biomes of South America [J]. Plant Diversity, 2023, 45(04): 369-384. |
[2] | Yue-Wen Xu, Lu Sun, Rong Ma, Yong-Qian Gao, Hang Sun, Bo Song. Does pollinator dependence decrease along elevational gradients? [J]. Plant Diversity, 2023, 45(04): 446-455. |
[3] | Li-Guo Zhang, Xiao-Qian Li, Wei-Tao Jin, Yu-Juan Liu, Yao Zhao, Jun Rong, Xiao-Guo Xiang. Asymmetric migration dynamics of the tropical Asian and Australasian floras [J]. Plant Diversity, 2023, 45(01): 20-26. |
[4] | Wei-Bo Du, Peng Jia, Guo-Zhen Du. Current patterns of plant diversity and phylogenetic structure on the Kunlun Mountains [J]. Plant Diversity, 2022, 44(01): 30-38. |
[5] | Xinhui Li, Tao Yang, Dandan Wang. Phylogenetic and functional structures of succession in plant communities on mounds of Marmota himalayana in alpine regions on the northeast edge of the Qinghai-Tibet Plateau [J]. Plant Diversity, 2021, 43(04): 275-280. |
[6] | Feng-Wei Lei, Ling Tong, Yi-Xuan Zhu, Xian-Yun Mu, Tie-Yao Tu, Jun Wen. Plastid phylogenomics and biogeography of the medicinal plant lineage Hyoscyameae (Solanaceae) [J]. Plant Diversity, 2021, 43(03): 192-197. |
[7] | Wenguang Sun, Haixia Wang, Rui Wu, Hang Sun, Zhimin Li. Karyomorphology of three endemic plants (Brassicaceae: Euclidieae and Arabideae) from the Qinghai-Tibet Plateau and its significance [J]. Plant Diversity, 2020, 42(03): 135-141. |
[8] | YIN Zhi-Jian, PENG Hua. A Floristic Study on the Seed Plants of the Cangshan Mountain Range, Dali, Yunnan, China [J]. Plant Diversity, 2015, 37(03): 233-245. |
[9] | LIU De-Tuan-, LI Wan-Sha-, HE Yu-Long-, CHEN Zhi-Fa-, HUANG Hua-, GAO Fu-, XIU Kun-, WU Zhi-Kun. Resources Evaluation of Seed Plants in Yulong Snow Mountain, Lijiang, Northwestern Yunnan [J]. Plant Diversity, 2015, 37(03): 318-326. |
[10] | LI Tuo-Jing, WANG Yu-Hua. The Plant Germplasm Database and Platform of QinghaiTibet Plateau [J]. Plant Diversity, 2013, 35(3): 234-240. |
[11] | SU Xu-, YUE Wei-, LIU Jian-Quan. Germplasm Collection and Preservation of Orinus (Poaceae) in the QinghaiTibet Plateau [J]. Plant Diversity, 2013, 35(3): 343-347. |
[12] | WANG Dong-Chao-, WU Jie-, YANG Yong-Hong-, CHEN Jia-Hui-, YANG Yong-Ping. Intraspecific Variation of Leaf Epidermal Cuticle Waxes under Scanning Electronic Microscope:Stipa purpurea and Oxytropis microphylla from the QinghaiTibet Plateau [J]. Plant Diversity, 2013, 35(3): 348-354. |
[13] | WANG Guang-Yan-, MENG Ying-, NIE Ze-Long-, YANG Yong-Ping. Karyotypes of Five Leontopodium Species from the Southeastern QinghaiTibet Plateau, Southwest China [J]. Plant Diversity, 2013, 35(3): 355-360. |
[14] | MENG Ying-, YANG Yong-Ping. Chromosome Atlas of Eight Asteraceae Species from the Qinghai-Tibet Plateau [J]. Plant Diversity, 2013, 35(3): 361-366. |
[15] | JIN Ming-Long-, WU Ji-Hang-, JIN Xiao-Feng-, DING Bing-Yang. The Floristic Analysis of Seed Plants in Hangzhou West Lake Area from Zhejiang Province [J]. Plant Diversity, 2012, 34(4): 333-. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||