Plant Diversity ›› 2024, Vol. 46 ›› Issue (04): 435-447.DOI: 10.1016/j.pld.2023.08.001
• Articles • Previous Articles
Jun-Yi Zhanga,b, Yue-Hong Chengc, Min Liaoa,d, Yu Fenga, Sen-Long Jinc, Ting-Mei Hec, Hai Heb, Bo Xua,d
Received:
2022-12-09
Revised:
2023-08-09
Published:
2024-07-29
Contact:
Hai He,E-mail:hehai@cqnu.edu.cn;Bo Xu,E-mail:xubo@cib.ac.cn
Supported by:
Jun-Yi Zhang, Yue-Hong Cheng, Min Liao, Yu Feng, Sen-Long Jin, Ting-Mei He, Hai He, Bo Xu. A new infrageneric classification of Gastrochilus (Orchidaceae: Epidendroideae) based on molecular and morphological data[J]. Plant Diversity, 2024, 46(04): 435-447.
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Beentje, H., 2012. The Kew Plant Glossary, an illustrated dictionary of plant terms. Kew Publishing, London, p. 164. Bentham, G., Hooker, J.D., 1883. Genera Platarum. London, vol. 3, p. 579. Bhattacharjee. A., Agrawala, D.K., Jalal, J.S., et al., 2021. Three new synonyms in Gastrochilus (Orchidaceae) with notes on typification of Gastrochilus calceolaris and misreport of Gastrochilus changjiangensis from India. Bot. Lett. 169, 106-118. https://doi.org/10.1080/23818107.2021.2000889. Chen, S.C., Tsi, Z.H., Wood, J.J., 2009. Gastrochilus D. Don. In: Wu, Z.Y., Raven, P.H., Hong, D.Y. (Eds). Flora of China vol. 25 (Orchidaceae). Missouri Botanical Garden Press, Science Press and St. Louis, Beijing, pp. 491-498. Chen, W.S., Lei, M., Ma, C.B., et al., 2022. Gastrochilus xizangensis (Aeridinae, Vandeae, Orchidaceae), a new species from Xizang, China. Phytotaxa 566, 219-226. https://doi.org/10.11646/phytotaxa.566.2.6. Darlu, P., Lecointre, G., 2002. When does the incongruence length difference test fail? Mol. Biol. Evol. 19, 432-437. https://doi.org/10.1093/oxfordjournals.molbev.a004098. Don, D., 1825. Prodromus Florae Nepalensis. J. Gale, London, p. 256. Govaerts, R., Campacci, M.A., Baptista, D.H., et al., 2021. World Checklist of Orchidaceae. The board of trustees of the Royal Botanic Gardens, Kew. http://www.kew.org/wcsp/monocots/. Guindon, S., Dufayard, J.F., Lefort, V., et al., 2010. New algorithms and methods to estimate Maximum-Likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321. https://doi.org/10.1093/sysbio/syq010. Hooker, J.D., 1890. Flora of British India, vol. 6. L. Reeve, London. IUCN., 2022. Guidelines for using the IUCN Red List Categories and Criteria, prepared by the Standards and Petitions Committee, version 15. http://www.iucnredlist.org/documents/RedListGuidelines.pdf. Jin, X.H., Dai, Z.Q., Liu, Q.Y., et al., 2010. Miscellaneous taxonomic notes on Orchidaceae from China. Acta Botanica Yunnan. 32, 331-333. Jin, X.H., Ye, D.P., Li, J.W., 2019. Atlas of native orchids in China. Henan Science and Technology Press, Zhengzhou, China, p. 1080. Johnson, M.G., Pokorny, L., Dodsworth, S., et al., 2019. A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-Medoids Clustering. Syst Biol. 68, 594-606. https://doi.org/10.1093/sysbio/syy086. Katoh, K., Standley, D.M., 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30, 772-780. https://doi.org/10.1093/molbev/mst010. Kim, C., Choi, H.K., 2011. Molecular systematics and character evolution of Typha (Typhaceae) inferred from nuclear and plastid DNA sequence data. Taxon 60,1417-1428. https://doi.org/10.1002/tax.605017. King, G., Pantling, R., 1898. The Orchids of Sikkim Himalaya. Annal Royal Botanical Garden Calcutta 8, 217-229. Kumar, P., Gale, S.W., Kocyan, A., et al., 2014. Gastrochilus kadooriei (Orchidaceae), a new species from Hong Kong, with notes on allied taxa in section Microphyllae found in the region. Phytotaxa 164, 91-103. https://doi.org/10.11646/phytotaxa.164.2.3. Li, J.W., Ya, J.D., Ye, D.P., et al., 2021. Taxonomy notes on Vandeae (Orchidaceae) from China: Five new species and two new records. Plant Divers. 43, 379-389. https://doi.org/10.1016/j.pld.2021.01.009. Li, Y., Jin, W.T., Zhang, L.G., et al., 2022. Biogeography and diversification of the tropical and subtropical Asian genus Gastrochilus (Orchidaceae, Aeridinae). Diversity 14, 396. https://doi.org/10.3390/d14050396. Liao, M., Cheng, Y.H., Zhang, J.Y., et al., 2022. Gastrochilus heminii (Orchidaceae, Epidendroideae), a new species from Sichuan, China, based on molecular and morphological data. PhytoKeys 215, 95-106. https://doi.org/10.3897/phytokeys.215.91061. Lindley, J., 1833. The genera and species of Orchidaceous plants. Ridgeways, London, pp. 220-225. Liu, D.K., Tu, X.D., Zhao, Z., et al., 2020. Plastid phylogenomic data yield new and robust insights into the phylogeny of Cleisostoma - Gastrochilus clades (Orchidaceae, Aeridinae). Mol. Phylogenet. Evol. 145, 106729. https://doi.org/10.1016/j.ympev.2019.106729. Liu, Q., 2017. Taxonomic revision study of Gastrochilus D. Don (Orchidaceae) in China. Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Yunnan, China, pp. 1-145. Liu, Q., Gao, J.Y., 2018. Gastrochilus dulongjiangensis (Aeridinae, Vandeae, Epidendroideae, Orchidaceae), a new species from Yunnan Province, China. Phytotaxa 340, 293-296. https://doi.org/10.11646/phytotaxa.340.3.11. Liu, Q., Kumar, P., Gao, J.Y., 2019b. Note on Gastrochilus gongshanensis (Orchidaceae). Kew Bulletin 74, 21. https://doi.org/10.1007/s12225-019-9808-3. Liu, Q., Song, Y., Jin, X.H., et al., 2019a. Phylogenetic relationships of Gastrochilus (Orchidaceae) based on nuclear and plastid DNA data. Bot. J. Linn. Soc. 189, 228-243. https://doi.org/10.1093/botlinnean/boy084. Liu, Q., Tan, Y.H., Gao, J.Y., 2016. A new species of Gastrochilus (Aeridinae, Vandeae, Orchidaceae) and a new record species from Yunnan, China. Phytotaxa 282, 066-070. https://doi.org/10.11646/phytotaxa.282.1.8. Liu, Q., Wu, X.F., Zhou, S.S., et al., 2023. New species and record of Gastrochilus (Orchidaceae, Aeridinae) from China and Laos. Phytotaxa 585, 210-224. https://doi.org/10.11646/PHYTOTAXA.585.3.3. Luning, B., 1967. Studies on Orchidaceae alkaloids IV. Screening of species for alkaloids 2. Phytochemistry 6, 857-861. Maddison, W.P., Maddison, D.R., 2011. Mesquite: A Modular System for Evolutionary Analysis, version 2.75. https://mesquite.project.org. Minh, B.Q., Nguyen, M.A.T., von-Haeseler, A., 2013. Ultrafast approximation for phylogenetic bootstrap. Mol. Biol. Evol. 30, 1188-1195. https://doi.org/10.1093/molbev/mst024. Nguyen, L.T., Schmidt, H.A., Von-Haeseler, A., et al., 2014. IQ-TREE: a fast and effective stochastic algorithm for estimating Maximum-Likelihood phylogenies. Mol. Biol. Evol. 32, 268-274. https://doi.org/10.1093/molbev/msu300. Nguyen, V.C., Averyanov, L.V., Maisak, T.V., et al., 2022. Gastrochilus pankajkumarii, (Aeridinae, Epidendroideae, Orchidaceae) a new lithophytic orchid from southern Vietnam. Taiwania 67, 35-39. https://doi.org/10.6165/tai.2022.67.35. Posada, D., 2008. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25, 1253-1256. https://doi.org/10.1093/molbev/msn083. Pridgeon, A.M., Cribb, P.J., Chase, M.W., et al., 2014. Genera orchidacearum: Epidendroideae, volume 6, Part 3. Oxford University Press, Oxford, p. 544. Rao, W.H., Liu, Z.J., Zhang, G.Q., et al., 2019. A new epiphytic species of Gastrochilus (Orchidaceae: Epidendroideae) from Yunnan, China. Phytotaxa 413, 296-300. https://doi.org/10.11646/phytotaxa.413.4.5. Raskoti, B.B., 2016. A new species of Gastrochilus and new records for the orchids of Nepal. Phytotaxa 233, 179-184. https://doi.org/10.11646/phytotaxa.233.2.5. Ronquist, F., Huelsenbeck, J.P., 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574. https://doi.org/10.1093/bioinformatics/btg180. Schlechter, F.R.R., 1913. Die Gattungen Gastrochilus Don. Und Gastrochilus Wall. Repertorium specierum novarum regni vegetabilis. Selbstverlag des Herausgebers, Berlin, pp. 313-315. Seidenfaden, G., 1988. Orchid genera in Thailand XIV. Fifty-nine vandoid genera. Opera Botanica 95, 1-398. Smith, J.J., 1905. Die Orchideen von Java. Flora von Buitenzorg 6, 632. Swofford, D.L., 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0 a169. Sinauer Associates, Sunderland. Thiers, B., 2021. Index Herbariorum: a global directory of public herbaria and associated staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/science/ih. Tsi, Z.H., 1996. A preliminary revision of Gastrochilus (Orchidaceae). Guihaia 16, 123-154. Turland, N.J., Wiersema, J.H., Barrie, F.R., et al., (2018). International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile 159, Koeltz Botanical Books, Glashutten. https://doi.org/10.12705/Code.2018. Wu, X.F., Ye, D.P., Pan, B., et al., 2019. Validation of Gastrochilus prionophyllus (Vandeae, Orchidaceae), a new species from Yunnan Province, China. In: Cai, J., Yu, W.B., Zhang, T., Li, D.Z. (Eds). Revealing of the plant diversity in China’s biodiversity hotspots. PhytoKeys 130, 161-169. https://doi.org/10.3897/phytokeys.130.34555. Xu, Z.H., Jiang, H., Ye, D.P., et al., 2010. The wild Orchids in Yunnan. Yunnan Science and Technology Press, Kunming, p. 496. Zhang, J.Y., Cheng, Y.H., Liao, M., et al., 2022a. Gastrochilus wolongensis (Orchidaceae): a new species from Sichuan, China, based on molecular and morphological data. Ecosyst. Health Sust. 8, 2101546. https://doi.org/10.1080/20964129.2022.2101546. Zhang, Z., Xie, P.L., Guo, Y.L., et al., 2022b. Easy353: a tool to get angiosperms353 genes for phylogenomic research. Mol. Biol. Evol. 39, msac261. https://doi.org/10.1093/molbev/msac261. Zhou, Z.H., Shi, R.H., Zhang, Y., et al., 2021a. Orchid diversity in China: recent discoveries. Plant Divers. 43, 341-342. https://doi.org/10.1016/j.pld.2021.07.004. Zhou, Z.H., Shi, R.H., Zhang, Y., et al., 2021b. Orchid conservation in China from 2000 to 2020: Achievements and perspectives. Plant Divers. 43, 343-349. https://doi.org/10.1016/j.pld.2021.06.003. Zou, L.H., Huang, J.X., Zhang, G.Q., et al., 2015. A molecular phylogeny of Aeridinae (Orchidaceae: Epidendroideae) inferred from multiple nuclear and chloroplast regions. Mol. Phylogenet. Evol. 85, 247-254. https://doi.org/10.1016/j.ympev.2015.02.014. |
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